{ "_id": "6a1ffa61b401979e7344472b", "Package": "archiDART", "Type": "Package", "Title": "Plant Root System Architecture Analysis Using DART and RSML\nFiles", "Version": "3.4", "Date": "2021-01-24", "Author": "Benjamin M Delory, Caroline Baudson, Yves Brostaux, Guillaume\nLobet, Patrick du Jardin, Loic Pages, Pierre Delaplace", "Maintainer": "Benjamin M Delory ", "Description": "Analysis of complex plant root system architectures (RSA)\nusing the output files created by Data Analysis of Root\nTracings (DART), an open-access software dedicated to the study\nof plant root architecture and development across time series\n(Le Bot et al (2010) \"DART: a software to analyse root system\narchitecture and development from captured images\", Plant and\nSoil, ), and RSA data encoded\nwith the Root System Markup Language (RSML) (Lobet et al (2015)\n\"Root System Markup Language: toward a unified root\narchitecture description language\", Plant Physiology,\n). More information can be found in\nDelory et al (2016) \"archiDART: an R package for the automated\ncomputation of plant root architectural traits\", Plant and\nSoil, .", "License": "GPL-2", "URL": "https://archidart.github.io/", "BugReports": "https://github.com/archiDART/archidart/issues", "Config/pak/sysreqs": "cmake libfreetype6-dev libglpk-dev libglu1-mesa-dev\nlibgmp3-dev make texlive libpng-dev libuv1-dev libxml2-dev\nlibgl1-mesa-dev zlib1g-dev", "Repository": "https://archidart.r-universe.dev", "Date/Publication": "2021-01-24 18:30:08 UTC", "RemoteUrl": "https://github.com/archidart/archidart", "RemoteRef": "HEAD", "RemoteSha": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 09:52:27 UTC", "User": "root" }, "MD5sum": "d99c8e78d0e54c4d0554f15e0ad8fe83", "_user": "archidart", "_type": "src", "_file": "archiDART_3.4.tar.gz", "_fileid": "2f1a4b68f9af655ad45493d3311da37e60c1016878096178bde34ac028371293", "_filesize": 2653233, "_sha256": "2f1a4b68f9af655ad45493d3311da37e60c1016878096178bde34ac028371293", "_created": "2026-06-03T09:52:27.000Z", "_published": "2026-06-03T09:56:49.258Z", "_distro": "noble", "_jobs": [ { "job": 79267585837, "time": 204, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7381369026" }, { "job": 79267585884, "time": 211, "config": "linux-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "7381371662" }, { "job": 79267585932, "time": 134, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "7381341133" }, { "job": 79267585835, "time": 121, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7381336216" }, { "job": 79266894511, "time": 228, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7381287976" }, { "job": 79267585802, "time": 169, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7381354885" }, { "job": 79267585898, "time": 127, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7381338893" }, { "job": 79267585906, "time": 125, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7381337942" }, { "job": 79267585827, "time": 196, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7381365767" } ], "_buildurl": "https://github.com/r-universe/archidart/actions/runs/26876996091", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/archidart/archidart", "_commit": { "id": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "author": "Benjamin Delory <>", "committer": "Benjamin Delory <>", "message": "Update perhomology\n", "time": 1611513008 }, "_maintainer": { "name": "Benjamin M Delory", "email": "benjamin.delory@leuphana.de" }, "_registered": true, "_dependencies": [ { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "gtools", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "XML", "role": "Imports" }, { "package": "rgl", "role": "Imports" }, { "package": "geometry", "role": "Imports" }, { "package": "sp", "role": "Imports" }, { "package": "TDA", "role": "Imports" } ], "_owner": "archidart", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 3, "_contributors": [ { "user": "benjamindelory", "count": 45, "uuid": 33630954 }, { "user": "guillaumelobet", "count": 1, "uuid": 2121453 }, { "user": "mphiel", "count": 1, "uuid": 32534353 } ], "_userbio": { "uuid": 33630937, "type": "organization", "name": "archiDART" }, "_downloads": { "count": 297, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/archiDART" }, "_mentions": 4, "_devurl": "https://github.com/archidart/archidart", "_searchresults": 14, "_rbuild": "4.6.0", "_assets": [ "extra/archiDART.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/archidart/archidart", "_realowner": "archidart", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2014-12-05" }, { "version": "1.1", "date": "2015-06-08" }, { "version": "1.2", "date": "2015-12-22" }, { "version": "1.3", "date": "2016-03-06" }, { "version": "1.4", "date": "2016-03-07" }, { "version": "2.0", "date": "2017-05-11" }, { "version": "3.0", "date": "2017-12-21" }, { "version": "3.2", "date": "2018-04-03" }, { "version": "3.3", "date": "2019-12-16" }, { "version": "3.4", "date": "2021-02-11" } ], "_exports": [ "archidraw", "archigrow", "architect", "bottleneckdist", "dartToTable", "latdist", "perhomology", "root", "rsmlToTable", "trajectory" ], "_help": [ { "page": "archidraw", "title": "Plotting Vectorized Root Systems", "topics": [ "archidraw" ] }, { "page": "archigrow", "title": "Computing Growth Rates and Plotting of Vectorized Root Systems", "topics": [ "archigrow" ] }, { "page": "architect", "title": "Computing Traits Describing The Global Root System Architecture", "topics": [ "architect" ] }, { "page": "bottleneckdist", "title": "Computing a Pairwise Bottleneck Distance Matrix", "topics": [ "bottleneckdist" ] }, { "page": "dartToTable", "title": "Import DART Files Into a Single Data Frame", "topics": [ "dartToTable" ] }, { "page": "latdist", "title": "Computing Lateral Root Length and Density Distribution", "topics": [ "latdist" ] }, { "page": "perhomology", "title": "Topological Analysis using Persistent Homology", "topics": [ "perhomology" ] }, { "page": "plot.barcode", "title": "Plot the Persistence Barcode", "topics": [ "plot.barcode" ] }, { "page": "root", "title": "Computing Attributes for Each Root", "topics": [ "root" ] }, { "page": "rsmlToTable", "title": "Import RSML Files Into a Single Data Frame", "topics": [ "rsmlToTable" ] }, { "page": "trajectory", "title": "Computing Root Growth Directions and Trajectories", "topics": [ "trajectory" ] } ], "_readme": "https://github.com/archidart/archidart/raw/HEAD/README.md", "_rundeps": [ "abind", "base64enc", "BH", "bslib", "cachem", "cli", "cpp11", "digest", "evaluate", "farver", "fastmap", "FNN", "fontawesome", "fs", "geometry", "glue", "gtools", "highr", "htmltools", "htmlwidgets", "igraph", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "linprog", "lpSolve", "magic", "magrittr", "Matrix", "memoise", "mime", "pkgconfig", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppEigen", "RcppProgress", "rgl", "rlang", "rmarkdown", "sass", "scales", "sp", "TDA", "tinytex", "vctrs", "viridisLite", "xfun", "XML", "yaml" ], "_score": 4.225309281725862, "_indexed": true, "_nocasepkg": "archidart", "_universes": [ "archidart" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.4", "date": "2026-06-03T09:55:32.000Z", "distro": "noble", "commit": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "fileid": "dd4aad0b271f01c95c053261a49c12fa62761d2cf8c03bdf58e3c458d9067d00", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/archidart/actions/runs/26876996091" }, { "r": "4.6.0", "os": "linux", "version": "3.4", "date": "2026-06-03T09:55:39.000Z", "distro": "noble", "commit": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "fileid": "83a6d8028114de62a336b5f28ebef1ec20f516bcd7b95a0529ff9e44cf9e4083", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/archidart/actions/runs/26876996091" }, { "r": "4.5.3", "os": "mac", "version": "3.4", "date": "2026-06-03T09:54:37.000Z", "commit": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "fileid": "9598a0feded9334c8d86cf44cbc4062741f8af46933b89ea559dacd40e6ccb28", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/archidart/actions/runs/26876996091" }, { "r": "4.6.0", "os": "mac", "version": "3.4", "date": "2026-06-03T09:54:28.000Z", "commit": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "fileid": "74660f159adc61339f8e7b681c32c42c94a3ce729f95245d7b6dc071c8ed948b", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/archidart/actions/runs/26876996091" }, { "r": "4.6.0", "os": "wasm", "version": "3.4", "date": "2026-06-03T09:55:40.000Z", "commit": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "fileid": "4f6f21ba8afab7716bd185ffae1a4ab28bf837059b52bdf40541c298f2c36829", "status": "success", "buildurl": "https://github.com/r-universe/archidart/actions/runs/26876996091" }, { "r": "4.7.0", "os": "win", "version": "3.4", "date": "2026-06-03T09:54:07.000Z", "commit": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "fileid": "f215aa27c1bd8b93722783026324e0eee21cb3078f38705ac93b71575534c621", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/archidart/actions/runs/26876996091" }, { "r": "4.5.3", "os": "win", "version": "3.4", "date": "2026-06-03T09:54:05.000Z", "commit": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "fileid": "049e6ae9709a8184fb4bd97ffd8e69c46279642ceab62c4378d39a217c8aaa6e", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/archidart/actions/runs/26876996091" }, { "r": "4.6.0", "os": "win", "version": "3.4", "date": "2026-06-03T09:55:04.000Z", "commit": "d6e1645001a4374f8a3cbca195aaf42f9243b88e", "fileid": "061bd59f8ac1b9d3f470406507b4ac8e9b47c64d2fb695c66b5249edecb250c9", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/archidart/actions/runs/26876996091" } ] }